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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0050s0134.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24445.9 Da PI: 9.4279 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.7 | 2.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaev++iifs++gklye++s Cagra.0050s0134.1.p 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 96.2 | 5e-32 | 77 | 171 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 s+k ++e+++++l+ e+a++ k+ie+L+ ++R+llGe+++s+s++eLqq+eqqLeks+k iR++K+++++eqie+l++kek+l en++ Cagra.0050s0134.1.p 77 VSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGSCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEK 166 466679************************************************************************************ PP K-box 94 Lrkkl 98 L++k+ Cagra.0050s0134.1.p 167 LTEKW 171 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.735 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-33 | 3 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.84E-42 | 3 | 78 | No hit | No description |
PRINTS | PR00404 | 7.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.9E-29 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.797 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000060 | Biological Process | protein import into nucleus, translocation | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS 60 NMQDTIERYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK IEQLEASKRK LLGEGIGSCS 120 IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLTEK WGSHESEVWS 180 NKNQESGRGD EESSPSSEVE TQLFIGLPCS SRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_D | 3e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_A | 3e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
1egw_D | 4e-19 | 3 | 69 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL |
1egw_C | 4e-19 | 3 | 69 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL |
1egw_B | 4e-19 | 3 | 69 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL |
1egw_A | 4e-19 | 3 | 69 | 2 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL |
3p57_J | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
3kov_A | 4e-19 | 3 | 69 | 2 | 68 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00076 | ChIP-chip | Transfer from AT2G45660 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF385731 | 0.0 | AF385731.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. | |||
GenBank | AY007726 | 0.0 | AY007726.1 Arabidopsis thaliana MADS box protein AGL20 mRNA, complete cds. | |||
GenBank | AY093967 | 0.0 | AY093967.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294978.1 | 1e-154 | hypothetical protein CARUB_v10024046mg | ||||
Swissprot | O64645 | 1e-145 | SOC1_ARATH; MADS-box protein SOC1 | ||||
TrEMBL | R0FYN5 | 1e-154 | R0FYN5_9BRAS; Uncharacterized protein | ||||
STRING | Bra000393.1-P | 1e-148 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-126 | AGAMOUS-like 20 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0050s0134.1.p |